\PassOptionsToPackage{unicode=true}{hyperref} % options for packages loaded elsewhere
\PassOptionsToPackage{hyphens}{url}
$if(colorlinks)$
\PassOptionsToPackage{dvipsnames,svgnames*,x11names*}{xcolor}
$endif$$if(dir)$$if(latex-dir-rtl)$
\PassOptionsToPackage{RTLdocument}{bidi}
$endif$$endif$%
\documentclass[12pt,$if(lang)$$babel-lang$,$endif$a4paper,$if(beamer)$ignorenonframetext,$if(handout)$handout,$endif$$if(aspectratio)$aspectratio=$aspectratio$,$endif$$endif$$for(classoption)$$classoption$$sep$,$endfor$]{$documentclass$}

% Removed the following options from documentclass settings and replaced them with desired values
% $if(fontsize)$$fontsize$,$endif$
% $if(papersize)$$papersize$paper,$endif$

% https://github.com/jgm/pandoc/issues/2937
% The "dollar" character is a special character in pandoc
% templates. To insert a literal "dollar", which is what you
% want here, you need to escape it by doubling $$.
% See the documentation on Templates.
\renewcommand{\labelitemi}{$$\bullet$$}
\renewcommand{\labelitemii}{$$\bullet$$}
\renewcommand{\labelitemiii}{$$\bullet$$}
\renewcommand{\labelitemiv}{$$\bullet$$}

\linespread{1}

% How to set document font to times new roman by command
% https://tex.stackexchange.com/questions/153168/how-to-set-document-font-to-times-new-roman-by-command
% \usepackage{newtxtext,newtxmath} % for Times New Roman font
\usepackage{newtxtext}
%\usepackage{times}

$if(beamer)$
$if(background-image)$
\usebackgroundtemplate{%
\includegraphics[width=\paperwidth]{$background-image$}%
}
$endif$
\usepackage{pgfpages}
\setbeamertemplate{caption}[numbered]
\setbeamertemplate{caption label separator}{: }
\setbeamercolor{caption name}{fg=normal text.fg}
\beamertemplatenavigationsymbols$if(navigation)$$navigation$$else$empty$endif$
$for(beameroption)$
\setbeameroption{$beameroption$}
$endfor$
% Prevent slide breaks in the middle of a paragraph:
\widowpenalties 1 10000
\raggedbottom
$if(section-titles)$
\setbeamertemplate{part page}{
\centering
\begin{beamercolorbox}[sep=16pt,center]{part title}
  \usebeamerfont{part title}\insertpart\par
\end{beamercolorbox}
}
\setbeamertemplate{section page}{
\centering
\begin{beamercolorbox}[sep=12pt,center]{part title}
  \usebeamerfont{section title}\insertsection\par
\end{beamercolorbox}
}
\setbeamertemplate{subsection page}{
\centering
\begin{beamercolorbox}[sep=8pt,center]{part title}
  \usebeamerfont{subsection title}\insertsubsection\par
\end{beamercolorbox}
}
\AtBeginPart{
  \frame{\partpage}
}
\AtBeginSection{
  \ifbibliography
  \else
    \frame{\sectionpage}
  \fi
}
\AtBeginSubsection{
  \frame{\subsectionpage}
}
$endif$
$endif$
$if(beamerarticle)$
\usepackage{beamerarticle} % needs to be loaded first
$endif$
$if(fontfamily)$
\usepackage[$for(fontfamilyoptions)$$fontfamilyoptions$$sep$,$endfor$]{$fontfamily$}
$else$
\usepackage{lmodern}
$endif$
$if(linestretch)$
\usepackage{setspace}
\setstretch{$linestretch$}
$endif$
\usepackage{amssymb,amsmath}
\usepackage{ifxetex,ifluatex}
\usepackage{fixltx2e} % provides \textsubscript
\ifnum 0\ifxetex 1\fi\ifluatex 1\fi=0 % if pdftex
  \usepackage[$if(fontenc)$$fontenc$$else$T1$endif$]{fontenc}
  \usepackage[utf8]{inputenc}
  \usepackage{textcomp} % provides euro and other symbols
\else % if luatex or xelatex
$if(mathspec)$
  \ifxetex
    \usepackage{mathspec}
  \else
    \usepackage{unicode-math}
  \fi
$else$
  \usepackage{unicode-math}
$endif$
  \defaultfontfeatures{Ligatures=TeX,Scale=MatchLowercase}
$for(fontfamilies)$
  \newfontfamily{$fontfamilies.name$}[$fontfamilies.options$]{$fontfamilies.font$}
$endfor$
$if(mainfont)$
    \setmainfont[$for(mainfontoptions)$$mainfontoptions$$sep$,$endfor$]{$mainfont$}
$endif$
$if(sansfont)$
    \setsansfont[$for(sansfontoptions)$$sansfontoptions$$sep$,$endfor$]{$sansfont$}
$endif$
$if(monofont)$
    \setmonofont[Mapping=tex-ansi$if(monofontoptions)$,$for(monofontoptions)$$monofontoptions$$sep$,$endfor$$endif$]{$monofont$}
$endif$
$if(mathfont)$
$if(mathspec)$
  \ifxetex
    \setmathfont(Digits,Latin,Greek)[$for(mathfontoptions)$$mathfontoptions$$sep$,$endfor$]{$mathfont$}
  \else
    \setmathfont[$for(mathfontoptions)$$mathfontoptions$$sep$,$endfor$]{$mathfont$}
  \fi
$else$
  \setmathfont[$for(mathfontoptions)$$mathfontoptions$$sep$,$endfor$]{$mathfont$}
$endif$
$endif$
$if(CJKmainfont)$
  \ifxetex
    \usepackage{xeCJK}
    \setCJKmainfont[$for(CJKoptions)$$CJKoptions$$sep$,$endfor$]{$CJKmainfont$}
  \fi
$endif$
$if(luatexjapresetoptions)$
  \ifluatex
    \usepackage[$for(luatexjapresetoptions)$$luatexjapresetoptions$$sep$,$endfor$]{luatexja-preset}
  \fi
$endif$
$if(CJKmainfont)$
  \ifluatex
    \usepackage[$for(luatexjafontspecoptions)$$luatexjafontspecoptions$$sep$,$endfor$]{luatexja-fontspec}
    \setmainjfont[$for(CJKoptions)$$CJKoptions$$sep$,$endfor$]{$CJKmainfont$}
  \fi
$endif$
\fi
$if(beamer)$
$if(theme)$
\usetheme[$for(themeoptions)$$themeoptions$$sep$,$endfor$]{$theme$}
$endif$
$if(colortheme)$
\usecolortheme{$colortheme$}
$endif$
$if(fonttheme)$
\usefonttheme{$fonttheme$}
$endif$
$if(mainfont)$
\usefonttheme{serif} % use mainfont rather than sansfont for slide text
$endif$
$if(innertheme)$
\useinnertheme{$innertheme$}
$endif$
$if(outertheme)$
\useoutertheme{$outertheme$}
$endif$
$endif$
% use upquote if available, for straight quotes in verbatim environments
\IfFileExists{upquote.sty}{\usepackage{upquote}}{}
% use microtype if available
\IfFileExists{microtype.sty}{%
\usepackage[$for(microtypeoptions)$$microtypeoptions$$sep$,$endfor$]{microtype}
\UseMicrotypeSet[protrusion]{basicmath} % disable protrusion for tt fonts
}{}
% Add indentations to all paragraphs all the time
\setlength{\parindent}{1cm}
\setlength{\parskip}{0pt}
% https://tex.stackexchange.com/questions/230453/fixing-first-paragraph-indentation-in-custom-class
% Fixing first paragraph indentation in custom class

% \makeatletter
% \let\@afterindentfalse\@afterindenttrue
% \@afterindenttrue

% $if(indent)$
% $else$
% \IfFileExists{parskip.sty}{%
% \usepackage{parskip}
% }{% else
% %\setlength{\parindent}{0pt}
% \setlength{\parindent}{0pt}
% \setlength{\parskip}{6pt plus 2pt minus 1pt}
% }
$endif$
$if(verbatim-in-note)$
\usepackage{fancyvrb}
$endif$
$if(colorlinks)$
\usepackage{xcolor}
$endif$
\usepackage{hyperref}
\hypersetup{
$if(title-meta)$
            pdftitle={$title-meta$},
$endif$
$if(author-meta)$
            pdfauthor={$author-meta$},
$endif$
$if(keywords)$
            pdfkeywords={$for(keywords)$$keywords$$sep$, $endfor$},
$endif$
$if(colorlinks)$
            colorlinks=true,
            linkcolor=$if(linkcolor)$$linkcolor$$else$Maroon$endif$,
            filecolor=$if(filecolor)$$filecolor$$else$Maroon$endif$,
            citecolor=$if(citecolor)$$citecolor$$else$Blue$endif$,
            urlcolor=$if(urlcolor)$$urlcolor$$else$Blue$endif$,
$else$
            pdfborder={0 0 0},
$endif$
            breaklinks=true}
\urlstyle{same}  % don't use monospace font for urls
$if(verbatim-in-note)$
\VerbatimFootnotes % allows verbatim text in footnotes
$endif$

% $if(geometry)$
% \usepackage[$for(geometry)$$geometry$$sep$,$endfor$]{geometry}
% $endif$
%\usepackage[left=4.25cm, right=4.25cm, top=4cm, bottom=4cm]{geometry}
\usepackage[left=3cm,right=3cm, top=3.5cm,bottom=3.5cm]{geometry}

$if(beamer)$
\newif\ifbibliography
$endif$
$if(listings)$
\usepackage{listings}
\newcommand{\passthrough}[1]{#1}
$endif$
$if(lhs)$
\lstnewenvironment{code}{\lstset{language=Haskell,basicstyle=\small\ttfamily}}{}
$endif$
$if(highlighting-macros)$
$highlighting-macros$
$endif$
$if(tables)$
\usepackage{longtable,booktabs}
$if(beamer)$
\usepackage{caption}
% These lines are needed to make table captions work with longtable:
\makeatletter
\def\fnum@table{\tablename~\thetable}
\makeatother
$else$
% Fix footnotes in tables (requires footnote package)
\IfFileExists{footnote.sty}{\usepackage{footnote}\makesavenoteenv{longtable}}{}
$endif$
$endif$
$if(graphics)$
\usepackage{graphicx,grffile}
\makeatletter
\def\maxwidth{\ifdim\Gin@nat@width>\linewidth\linewidth\else\Gin@nat@width\fi}
\def\maxheight{\ifdim\Gin@nat@height>\textheight\textheight\else\Gin@nat@height\fi}
\makeatother
% Scale images if necessary, so that they will not overflow the page
% margins by default, and it is still possible to overwrite the defaults
% using explicit options in \includegraphics[width, height, ...]{}
\setkeys{Gin}{width=\maxwidth,height=\maxheight,keepaspectratio}
$endif$
$if(links-as-notes)$
% Make links footnotes instead of hotlinks:
\DeclareRobustCommand{\href}[2]{#2\footnote{\url{#1}}}
$endif$
$if(strikeout)$
\usepackage[normalem]{ulem}
% avoid problems with \sout in headers with hyperref:
\pdfstringdefDisableCommands{\renewcommand{\sout}{}}
$endif$
\setlength{\emergencystretch}{3em}  % prevent overfull lines
\providecommand{\tightlist}{%
  \setlength{\itemsep}{0pt}\setlength{\parskip}{0pt}}
$if(numbersections)$
\setcounter{secnumdepth}{$if(secnumdepth)$$secnumdepth$$else$5$endif$}
$else$
\setcounter{secnumdepth}{0}
$endif$
$if(beamer)$
$else$
% SD: Switched to subparagraph = yes case because otherwise titlesec
% package below does not work.
% $if(subparagraph)$
% $else$
% % Redefines (sub)paragraphs to behave more like sections
% \ifx\paragraph\undefined\else
% \let\oldparagraph\paragraph
% \renewcommand{\paragraph}[1]{\oldparagraph{#1}\mbox{}}
% \fi
% \ifx\subparagraph\undefined\else
% \let\oldsubparagraph\subparagraph
% \renewcommand{\subparagraph}[1]{\oldsubparagraph{#1}\mbox{}}
% \fi
% $endif$
$endif$
$if(pagestyle)$
\pagestyle{$pagestyle$}
$endif$

% set default figure placement to htbp
\makeatletter
\def\fps@figure{htbp}
\makeatother

$for(header-includes)$
$header-includes$
$endfor$
$if(lang)$
\ifnum 0\ifxetex 1\fi\ifluatex 1\fi=0 % if pdftex
  \usepackage[shorthands=off,$for(babel-otherlangs)$$babel-otherlangs$,$endfor$main=$babel-lang$]{babel}
$if(babel-newcommands)$
  $babel-newcommands$
$endif$
\else
  % load polyglossia as late as possible as it *could* call bidi if RTL lang (e.g. Hebrew or Arabic)
  \usepackage{polyglossia}
  \setmainlanguage[$polyglossia-lang.options$]{$polyglossia-lang.name$}
$for(polyglossia-otherlangs)$
  \setotherlanguage[$polyglossia-otherlangs.options$]{$polyglossia-otherlangs.name$}
$endfor$
\fi
$endif$
$if(dir)$
\ifxetex
  % load bidi as late as possible as it modifies e.g. graphicx
  \usepackage{bidi}
\fi
\ifnum 0\ifxetex 1\fi\ifluatex 1\fi=0 % if pdftex
  \TeXXeTstate=1
  \newcommand{\RL}[1]{\beginR #1\endR}
  \newcommand{\LR}[1]{\beginL #1\endL}
  \newenvironment{RTL}{\beginR}{\endR}
  \newenvironment{LTR}{\beginL}{\endL}
\fi
$endif$
$if(natbib)$
\usepackage[$natbiboptions$]{natbib}
\bibliographystyle{$if(biblio-style)$$biblio-style$$else$plainnat$endif$}
$endif$
$if(biblatex)$
\usepackage[$if(biblio-style)$style=$biblio-style$,$endif$$for(biblatexoptions)$$biblatexoptions$$sep$,$endfor$]{biblatex}
$for(bibliography)$
\addbibresource{$bibliography$}
$endfor$
$endif$

$if(project_name)$
\title{\vspace*{-2em}\begin{minipage}{\linewidth}\centering \textbf{$project_name$}$if(company)$\\ \vspace*{0.5em}\textbf{$company$} $endif$\end{minipage}}
$endif$

$if(date)$\date{$date$}$endif$

$if(team_members)$
\author{
\begin{minipage}{\linewidth}\vspace*{-0.5em} \centering 
\textbf{Project Team $if(team_no)$$team_no$$endif$}\\ $for(team_members)$$team_members$\\ $endfor$\vspace*{1em} Industrial Engineering \\ Bilkent University \\ 06800 Ankara
$if(industrial_advisors)$ 
\\\vspace*{1em} \textbf{Industrial Advisor}\\ 
$for(industrial_advisors)$$industrial_advisors$\\ $endfor$ 
$endif$ 
$if(academic_advisors)$ 
\vspace*{1em} \textbf{Academic Advisor}\\ 
$for(academic_advisors)$$academic_advisors$\\ $endfor$ 
$endif$ 
\end{minipage}}
$endif$
$if(institute)$
\providecommand{\institute}[1]{}
\institute{$for(institute)$$institute$$sep$ \and $endfor$}
$endif$
\date{$date$}
$if(beamer)$
$if(titlegraphic)$
\titlegraphic{\includegraphics{$titlegraphic$}}
$endif$
$if(logo)$
\logo{\includegraphics{$logo$}}
$endif$
$endif$

% How to change font size for abstract title
% https://tex.stackexchange.com/questions/366169/how-to-change-font-size-for-abstract-title
\makeatletter
\renewenvironment{abstract}{%
    \if@twocolumn
      \section*{\abstractname}%
    \else %% <- here I've removed \small
      \begin{center}%
        % {\bfseries \Large\abstractname\vspace{\z@}}%  %% <- here I've added \Large
        {\bfseries \abstractname\vspace{\z@}}%  %% <- here I've added \Large
      \end{center}%
      \quotation
    \fi}
    {\if@twocolumn\else\endquotation\fi}
\makeatother

% https://stackoverflow.com/questions/1321721/how-do-i-change-the-amount-of-whitespace-between-sections-in-latex
% How do I change the amount of whitespace between sections in Latex?
% https://tex.stackexchange.com/questions/291932/italicize-the-subsubsection-in-latex
% italicize the subsubsection in latex
% https://stackoverflow.com/questions/42916124/not-able-to-use-titlesec-with-markdown-and-pandoc
% Not able to use titlesec with markdown and pandoc? SD: I needed to disable subparagraph mode of pandoc inorder to be able to use titlesec package.
% SD: Put a dot after section number and write subsubsection titles italic
\usepackage{titlesec}
\titleformat*{\subsubsection}{\large\bfseries}
% \titleformat{\section}{\bfseries\Large}{\thesection.}{0.5em}{}
%\titleformat{\subsubsection}{}{\thesubsubsection}{1em}{\itshape}
% https://tex.stackexchange.com/questions/165930/bold-and-italic-subsection-title-with-custom-font-size
% write subsubsection titles both italic and bold
% \titleformat{\subsubsection}
%   {\normalfont\fontsize{12}{17}\sffamily\bfseries\slshape}
%   {\thesubsubsection}
%   {1em}
%   {}



% https://latex.org/forum/viewtopic.php?t=4204
% description always bold?
% Not bold but italic definition list items
\renewcommand*\descriptionlabel[1]{\hspace\labelsep\normalfont\itshape #1}

\begin{document}
$if(project_name)$
$if(beamer)$
\frame{\titlepage}
$else$
\maketitle
\thispagestyle{empty}
$endif$
\vfill
$if(abstract)$
\renewcommand{\abstractname}{ABSTRACT}
\vspace*{-1.5em}
\begin{abstract}
\noindent $abstract$

$if(keywords)$\noindent \textbf{Keywords:} $keywords$$endif$
\end{abstract}
$endif$
$endif$

$for(include-before)$
$include-before$

$endfor$
$if(toc)$
\clearpage
$if(toc-title)$
\renewcommand*\contentsname{$toc-title$}
$endif$
$if(beamer)$
\begin{frame}
$if(toc-title)$
\frametitle{$toc-title$}
$endif$
\tableofcontents[hideallsubsections]
\end{frame}
$else$
{
$if(colorlinks)$
\hypersetup{linkcolor=$if(toccolor)$$toccolor$$else$$endif$}
$endif$
\setcounter{tocdepth}{$toc-depth$}
\tableofcontents
}
$endif$
$endif$
$if(lot)$
\listoftables
$endif$
$if(lof)$
\listoffigures
$endif$
$body$

$if(natbib)$
$if(bibliography)$
$if(biblio-title)$
$if(book-class)$
\renewcommand\bibname{$biblio-title$}
$else$
\renewcommand\refname{$biblio-title$}
$endif$
$endif$
$if(beamer)$
\begin{frame}[allowframebreaks]{$biblio-title$}
\bibliographytrue
$endif$
\bibliography{$for(bibliography)$$bibliography$$sep$,$endfor$}
$if(beamer)$
\end{frame}
$endif$
$endif$
$endif$
$if(biblatex)$
$if(beamer)$
\begin{frame}[allowframebreaks]{$biblio-title$}
\bibliographytrue
\printbibliography[heading=none]
\end{frame}
$else$
\printbibliography$if(biblio-title)$[title=$biblio-title$]$endif$
$endif$
$endif$

$for(include-after)$
$include-after$

$endfor$

\end{document}
